The current state of the analysis can be accomplished either by typing the following sequence of commands into XLisp-Stat, or by downloading the Site 9574 object to a suitably configured browser.
A user's manual offers some guidance on use of the software.
Bold lines are typed by the user. Red font indicates a comment. Other lines indicate output from the diversity.lsp software.
The path should point to the directory in which
you've placed the landsnail data, *.dat and *.xax.
> (set-working-directory "/home/tdye/html/IA/data/")
T
The path should point to the directory in which
you've placed the diversity.lsp software. Often this line will
work unchanged.
> (load "Diversity/diversity.lsp")
; loading /usr/lib/xlispstat/Diversity/diversity.lsp
; loading /usr/lib/xlispstat/Diversity/data-objects.lsp
; loading /usr/lib/xlispstat/Diversity/onlisp-utility-functions.lsp
; loading /usr/lib/xlispstat/Diversity/div-utils.lsp
; loading /usr/lib/xlispstat/Diversity/utility.lsp
T
> (def d (load-dataset "9574.dat" :name "9574"))
D
> (send d :read-subset "example.sub")
"example.sub"
> (send d :read-x-axis "9574.xax")
"9574.xax"
> (send d :set-x-axis-dialog)
"DEPTH"
> (send d :set-current-subset-dialog)
"NATIVE-EXTINCT"
> (send d :estimate-diversity 500)
Generating 500 pseudo-observations of size 499
Generating 500 pseudo-observations of size 5039
Generating 500 pseudo-observations of size 1311
Generating 500 pseudo-observations of size 2060
Generating 500 pseudo-observations of size 539
Generating 500 pseudo-observations of size 263
Generating 500 pseudo-observations of size 208
Generating 500 pseudo-observations of size 197
Generating 500 pseudo-observations of size 352
Generating 500 pseudo-observations of size 753
NIL
The following three messages create graphs.
> (send d :plot-subset-proportion)
#<Object: 8172b58, prototype = SCATTERPLOT-PROTO>
> (send d :plot-residual-richness 0.8)
NIL
> (send d :plot-residual-evenness 0.8)
NIL
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